Scaffold CowRDRAFT01_c0016128

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold CowRDRAFT01_c0016128

Scaffold CowRDRAFT01_c0016128

Overview

Basic Information
Taxon OID	2236876025 Open in IMG/M
Scaffold ID	CowRDRAFT01_c0016128 Open in IMG/M
Source Dataset Name	Switchgrass-associated rumen community WFO
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2734
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	Urbana
Coordinates	Lat. (^o)	40.1	Long. (^o)	-88.26	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074260	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
CowRDRAFT01_00161283	F074260	GAGG	MAAKKKEEKELLPFDELPIAVKRNRRLLYEYIRTGELPE

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