Scaffold PC6_p0646831

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PC6_p0646831

Scaffold PC6_p0646831

Overview

Basic Information
Taxon OID	2236876023 Open in IMG/M
Scaffold ID	PC6_p0646831 Open in IMG/M
Source Dataset Name	Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - PC6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	GATC-Biotech AG, Konstanz, Germany
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	980
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water Concentrator Pond → Saline Water Concentrator Pond Microbial Communities From Bras Del Port Saltern, Santa Pola, Spain

Source Dataset Sampling Location
Location Name	Punta Cormorant, Spain
Coordinates	Lat. (^o)	38.11	Long. (^o)	-0.36	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074827	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
PC6_06468312	F074827	AGGAGG	VPKTPRSQAIRVCGQQWELAFRSLKRRQLCGLPVYDRRRVSVCTSMRGLDRLDTMCHELLHACQGYASEEHVAEVATTLATVLWQIGYRMEADNAKA

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