Scaffold none_p190754

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold none_p190754

Scaffold none_p190754

Overview

Basic Information
Taxon OID	2236876008 Open in IMG/M
Scaffold ID	none_p190754 Open in IMG/M
Source Dataset Name	Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	529
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Cape Meares
Coordinates	Lat. (^o)	45.483	Long. (^o)	-124.918	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031898	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
none_1907541	F031898	AGGAG	MESTVLKDFQEKIEEMNDDDARLKIIKDWEKYRERKDLGIRNYPESCMERMLSDDQVHGI

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