NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2227488943

Scaffold 2227488943


Overview

Basic Information
Taxon OID2225789004 Open in IMG/M
Scaffold ID2227488943 Open in IMG/M
Source Dataset NamePassalidae beetle gut microbial communities from Costa Rica -Larvae (4BL+4ML+4MSL)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Source Dataset Sampling Location
Location NameQuebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
CoordinatesLat. (o)10.207151Long. (o)-84.007673Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066905Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
2227958697F066905AGGAGGMADDLRGCGCGCDNNNGLLGGLFGGCGDNSLLFFIIVFLLLFTNNGR
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