Scaffold 2225762242

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225762242
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3564
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004837	Metagenome / Metatranscriptome	421	Y
F006621	Metagenome / Metatranscriptome	368	Y
F012449	Metagenome / Metatranscriptome	280	Y
F015705	Metagenome / Metatranscriptome	252	N

Sequences

Protein ID	Family	RBS	Sequence
2225179600	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQWWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQATNR
2225179601	F004837	N/A	MTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAEANHHTVTHALTNQSPQQ
2225179602	F006621	N/A	MPSPTKAPNNEAQVQARMDSLMMXITTLCDCIGAVEESNSPNAFAVKMKIVDKIDELIDKIEY
2225179607	F015705	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKVVKEILDNSLVAAKVKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNIVAWERAIAELANVDCVGAYWLTKEEFPQI