NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold 2225762127

Scaffold 2225762127


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225762127 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4924
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F009807Metagenome312N
F044372Metagenome / Metatranscriptome154N
F044982Metagenome153N

Sequences

Protein IDFamilyRBSSequence
2225179119F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFV
2225179120F009807N/AMFGGWSVFLSKFRKLLESFERLFTAPDQGDAGPVTNPLAGYGWLMVVWRMANKDVLKFDAIFAMKAVEFLNYALLIHDILEAERMEAERMRRK
2225179121F044982GGAMEFDVFVGGSGKKLTDLQKEALADFGVSLADGAIENKSYALVTKWLEGVVRLAKQNLANANAIASNSLAQSIVVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPIQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTVNIAEVLGKSISVATVR
2225179122F044372N/AMAISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.