Scaffold 2225762110

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225762110
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5983
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F003660	Metagenome / Metatranscriptome	474	Y
F007748	Metagenome / Metatranscriptome	345	N
F011581	Metagenome / Metatranscriptome	289	N
F029089	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
2225179014	F007748	AGG	VNLLETTVIGTVSAIVGGAIAWLTRGRFTADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIELLENTIQQLETENATLKSQR
2225179018	F011581	N/A	MTYHSTRPAKALTNALERLMIAISPQDLEQNHALLCEYRRACELLGYDPAKAQWAGVHEVSASQLPADQDHTVCYYPLLNPEE
2225179020	F003660	N/A	MTHETKTKLKAALATGYIVLTTCLGIAFFGRFIIAIITN
2225179022	F029089	GGA	VYKGKHGAAPKPANTNLLDLNDKLGLVPAYDDLTAATLKADFLKLVKKLPADQQERFMKDIDQMTPARFEKGIQFIQNQLSKK
2225179023	F003459	N/A	LERQSLLLLSSIPIPTNNQNSHEPSRNHPQRRTISKQDIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYSQDQQWSDLQASMKAREELLKLAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFKAS