Scaffold 2225762050

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225762050
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2915
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F002488	Metagenome / Metatranscriptome	554	N
F039129	Metagenome	164	N
F041737	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
2225178710	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDISIVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGWFPEKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKILSDYSKHLTKGMQGQ
2225178712	F039129	GGA	MEFDVFVGGSGKKLTDLQKEALADFGVSLADGAIENKSYALVTKWLEGVVRLAKQNLANANAIASNSLAQSIVVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRSAK
2225178713	F041737	GGA	VSRERRRATVAPNSPFRFKGNPIPIRPLQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR
2225178715	F002488	N/A	MCTLPRTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL