Scaffold 2225762040

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225762040
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9594
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F009318	Metagenome / Metatranscriptome	319	Y
F012449	Metagenome / Metatranscriptome	280	Y
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
2225178643	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQAWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLA
2225178650	F009318	N/A	MHRLLLLLLLTACTNDRPWTVIEVRXKGXACEYVLSRSNGFGPQLKNITDSCGKYTLFQTINP
2225178657	F003459	N/A	MNHLVTIPKSDISKADIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYQHDQVWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKAS
2225178658	F098895	N/A	MNNLLTQCNADVFKAILEIKEQSPIIGEKLISILQKHEYYWAMTFDEVMWFAAHLPWPIWDRKVHTLNSLFQSQQTTKMP