Scaffold 2225762020

Basic Information
Taxon OID	2222084011 Open in IMG/M
Scaffold ID	2225762020 Open in IMG/M
Source Dataset Name	Coastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University Miguel Hernandez
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2222084011 Open in IMG/M

Scaffold ID

2225762020 Open in IMG/M

Source Dataset Name

Coastal lagoon microbial communities from Albufera, Spain - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University Miguel Hernandez

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14461
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.64%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14461

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.64%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location Name	Spain: La Albufera de Valencia
Coordinates	Lat. (^o)	39.330917	Long. (^o)	-0.343	Alt. (m)	Depth (m)	.3
Location on Map

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Source Dataset Sampling Location

Location Name

Spain: La Albufera de Valencia

Coordinates

Lat. (^o)

39.330917

Long. (^o)

-0.343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002356	Metagenome / Metatranscriptome	567	N
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F054815	Metagenome	139	N
F067659	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
2225178566	F007748	AGTAG	VNLIETTIIGTISAIVGGAVAWLTRGRFTADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIELLENTIQVLEAENATLKSQR
2225178574	F054815	N/A	MKALFISEQTLLDNSVINENVSFTQIRPTIVKVQEMRIQPIVGSALL
2225178578	F006105	GGA	MIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNSTTDFTLLKSANLSQYTERYDKFSLAVGSIETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTFANSIQYTIFGASDEGVFDQTFDQSFA
2225178582	F002356	N/A	MNLKSAIETLRTELRKFTTQKQSFADYKLADGTVIRVDGDLVAGTPVYVIADDTTLPAPDGEHTVEGVGVVKTEGGKITEIVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPMVDPLMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKASAQQNFNALAEAIQSLKNPK
2225178585	F067659	N/A	QLELTMLLSSVDIYQLDFRKPVYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTEFAAKSTSPPRSDPSGLFNGPIDPDPVDPGYEPPVNPELPSEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters