Scaffold 2225761901

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225761901
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8980
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F006105	Metagenome / Metatranscriptome	381	Y
F009057	Metagenome / Metatranscriptome	323	Y
F011581	Metagenome / Metatranscriptome	289	N

Sequences

Protein ID	Family	RBS	Sequence
2225178023	F011581	N/A	MTYHSTRPAKALTNALERLMIAXXPQDLEQXHALLCXYRRACELLGYDPAKAQWAGVHEVSASQLPKDEDHTVCYYPLLNPEE
2225178029	F009057	N/A	MPTFRKFAFPDGATADKVLGEFLNPLDFAVPVGEIDKAVCVDILFHDTCPEHLAAFVVWPKPCGVHAFSGWEEQYAADYKEFATSPQ
2225178032	F001129	N/A	MPTPILQQMLGQGGTMEFVDAAVSGKNYDFLVVNAAATFTTLTGSGGENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
2225178033	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDSGTLNLVVGVYFSDRLESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLQFQIPYSHSVCEIPS
2225178039	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNLTTDFTLLKSANLSSYTERYDKFSLAVGSIETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGATDEGVFDQTFDPSFA