Scaffold 2225761569

Basic Information
Taxon OID	2222084011 Open in IMG/M
Scaffold ID	2225761569 Open in IMG/M
Source Dataset Name	Coastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University Miguel Hernandez
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2222084011 Open in IMG/M

Scaffold ID

2225761569 Open in IMG/M

Source Dataset Name

Coastal lagoon microbial communities from Albufera, Spain - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University Miguel Hernandez

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9278
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9278

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location Name	Spain: La Albufera de Valencia
Coordinates	Lat. (^o)	39.330917	Long. (^o)	-0.343	Alt. (m)	Depth (m)	.3
Location on Map

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Source Dataset Sampling Location

Location Name

Spain: La Albufera de Valencia

Coordinates

Lat. (^o)

39.330917

Long. (^o)

-0.343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F004837	Metagenome / Metatranscriptome	421	Y
F006621	Metagenome / Metatranscriptome	368	Y
F012449	Metagenome / Metatranscriptome	280	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
2225176723	F021095	N/A	MSIFVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELGGWSLSSYFRIGSSFTNVRPLTTPQAFTVYQGGSNFLAINGTKYETVVPTADWLVSARVAYKGVNYDFAVSPSLSGTTDFNIQRFACGPANLSGSIPALSGAVEGDSYTVRFISNAAGQSDTTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQLEIAVAYDNNIL
2225176726	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKAHAKIGDVWGVVSFFC
2225176733	F006621	N/A	MPSPTKAPSNEAQVQARMDSLMMVITTLCDCIGAVEESNSPNAFAVKMKIVDKIDELIDKIEY
2225176734	F004837	N/A	MTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYEQADQFAEANHHQVSHALTNKSPQQ
2225176735	F012449	AGG	MDTLIFPLLISSLTALAIAEYRVLPQWWYTTWLGRHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQATNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters