Scaffold 2225761436

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225761436
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15831
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F002356	Metagenome / Metatranscriptome	567	N
F006105	Metagenome / Metatranscriptome	381	Y
F015569	Metagenome / Metatranscriptome	253	Y
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
2225176085	F015569	AGG	MLRVSVNLVLSQGNGNQVKIYIAKNGTIIAQSLADLTLSHNNGHAVFTETVLQGAANDEFAIYINAVNDGGSIAISALTFTAHTL
2225176086	F006105	GGA	MIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNSTTDFTLLKSANLSQYTERYDKFQITVGSLETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGATDEGVFDQTFDPSFA
2225176090	F002356	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLADGTVIRVDGDLVAGTPVYVIADDTTLPAPDGEHTVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPMVDPLMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKASAQQNFNALAEAIQSLKNPK
2225176093	F020667	N/A	MSVTLIAYPTTSFVNDLAAWNNFNTRADADGADAVEPECFDCLYSRFAPLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPNSGHVSGTWTASGAASSGYVYGVVDAAGFTDILAQNGGGWFQAPWWKLGPSIYVKKMVDLIFTEAGFRYSSTFFNSAFFNKLVMPYAAGTMPVNLSGSNILAQSTGNTGVFSELVEEKVLFSKDTPAPFYDNPGYWVASSSTFVAPSIDTRWNVRVSFTLSGSVASTNNNICRMAIRNPAQNTNFATAINFSLKKNVVSVIDFNNVTIPAFSTANIQFLVEWDGIGGFTQNFTILSGATIQWTCLENPSSIGTLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTIKALQTGYRLAQYNLIEGQTEWAYQYGVSSTVSGNVALSVGILKMPFVSHIDNPYSPNVDLTFGQPRLVYYNAVNASGNPFAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATTTTPIASDPEFLFNGPIDPDPVDPGYEXPVNPELPSEG
2225176094	F021095	N/A	MSISVXSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQRVVETLIAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLNPYFRIGSSFTNVRPLTTPQAFTVYQGGSNFLAINGTKYETVVPTADWLVSARVAYKGVNYDFAVSPSLSGTTDFNIQRFACGPANLSGSIPALSGAVEGDSYTVRFISNAAGQSDTTTFTFGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
2225176097	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGWFPEKYDGASHQERAELLKAHAKIGDVWGVVSFFCKFRKLLESFERLFSSPDQGMQGQ