NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225761088

Scaffold 2225761088


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225761088 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25267
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (16.28%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F004837Metagenome / Metatranscriptome421Y
F006105Metagenome / Metatranscriptome381Y
F009318Metagenome / Metatranscriptome319Y
F018160Metagenome / Metatranscriptome236N
F020667Metagenome222Y
F021095Metagenome220N
F032581Metagenome / Metatranscriptome179N
F044982Metagenome153N
F056564Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
2225175052F009318N/AMHRLLLLFLLTACTNNRPWTVIEVRPKGDACEYVLSRSNGFGPQLKIQTDSCGKYTLFQTINP
2225175060F004837N/AMTQAEYLLAQKHRHYWEQYQAHLYMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEVDQFAQDNHHTVTHALNNPNP
2225175070F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKAHAKIGDVWGGGLEFFC
2225175071F018160N/AMVVWRMANKDVLKFDAIFAMKAVEFLNYALLIHDILESERQEAERMRRR
2225175072F044982N/AMEFDVFVGGSGKKLTDLQKEALADFGVSLADGAIENKSYALVTKWLEGVVRLAKQNLANANAIGSNSLAQSITVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPIQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR
2225175073F021095N/AMSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPSPTQTGFVEHSGFYSGYRLDFTQEYGNTPAVTGATTTVSGVMAFAGNLEQLELADWSLSPYFRVGLNFAISRPLTTQKNFTVYKGGRNFLAINATRYTALSGFDNWLVSARVNYKSVDYDFAVTPSLSGITDYNIQRFACGPANLLGSIPALSGAVEGDSYTVQFFSDAIGGLNLTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
2225175074F020667N/AMSVTLIAYPTTSFVNDLAAWNNFNTRADADGADTKEEACFDCLYSRFAPLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSSGYVYGVVDAAGFSDLTQGNLVAGWWQLGPSLYVKKMVDLIFAQAGFRYSSNFFNSSLFNKLVIPYAAGTMPVNLSGSNIFAQSTGNTANFIKGANQTLAFPKDTPAPFYDNPGYWVASSSTFVAPALPSRWNVDVTLNVSGSISFSGSIRCNMSIRNITDSTDISVISNITARTQNQFTVRFENITIPADITANVGFVITADTVVATQNFSVLSGATVQWTCLENPVGIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYTSGVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFASDKVVGRTWDLEGTRLSGSIKPLQTGYRIAQYNRITGQTPWLYWYGLEEDGFAATTPITSLPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPVYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTEFAAKSTSPPRSDPSGLFNGPIDPDPVDPGYEPPVNPELPSEG
2225175080F056564N/AMRICIVYNAHPTGCSFYRLEMPNAYLGDNYTEFDYVCVDNIANVKDEDLKTVDVWLFNRLWCQGTLDQIRKVYEALTAFGAKVILDLDD
2225175082F006105AGGVIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNLTTDFTLLKSANLSSYTERYDKFSLAVGSIETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGATDEGVFDQTFDPSFA
2225175086F032581N/AMVLAFKYMNKGMVRRTSEESSQMSMDEITRLTDKVKNDAEWYSERITRYLMENRTDYPLFNSPPSALDTIYPNGTNYNTGMALDARTLRRGAGLDRPWPYGYDPYCNNC
2225175087F000847N/AMSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLALTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLQFQIPYSHSVCEIPS
2225175088F001129N/AMPTPILQQMLGQGGTMEFVDAAVSGKNYDFLVVNAAATFTTLTGTGGEDLLTAYAMSGKSVSAGIVISGRNGGKITEVTPSVGSVIGYTFL
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