NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225760964

Scaffold 2225760964


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225760964 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6919
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005845Metagenome / Metatranscriptome388Y
F009318Metagenome / Metatranscriptome319Y
F046907Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
2225174724F009318N/AMHRLLLLLLLTACTNDRPWTVIEVRPKGNACEYVXSRSNGFGPQIKIKTDTCGKYTLFQTINP
2225174726F005845N/AMKPTPTDFRRWQIHIRKECVSCSKPDRSETISPWKVNWTLLGRILQAKNA
2225174727F046907N/AMXWIRPQDQMPDGGKPVLITDNEGLQIVAWYSVSNNMWYSENHSWFTSEVLYYMPIPEIL

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