Scaffold 2225759761

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225759761
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40220
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (13.85%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001129	Metagenome / Metatranscriptome	768	Y
F001345	Metagenome / Metatranscriptome	718	N
F003267	Metagenome / Metatranscriptome	496	N
F003459	Metagenome	485	N
F003660	Metagenome / Metatranscriptome	474	Y
F004837	Metagenome / Metatranscriptome	421	Y
F009057	Metagenome / Metatranscriptome	323	Y
F009318	Metagenome / Metatranscriptome	319	Y
F011581	Metagenome / Metatranscriptome	289	N
F012449	Metagenome / Metatranscriptome	280	Y
F020667	Metagenome	222	Y
F021095	Metagenome	220	N
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
2225171896	F004837	N/A	MTQDEFVLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAQDNQHTVTHALTNQSPQQ
2225171897	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQAWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQITNR
2225171898	F001345	N/A	MASAETVILDLYRTGEIRKACLTXTGGDPLWRDLEQECVLILLEKDPAKILQIHEQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQSEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQNHGHADISPAD
2225171905	F009318	N/A	MHRLLLLFLLTACTNDRPWTVIEVRAKGDACEYVLSRSNGFGPQLKNITDSCGKYQLFQTIKP
2225171913	F003459	N/A	MNHLVTIPKSDISKQDIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKSTEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYSQDQQWSDLQASMKAREELLKMAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFK
2225171916	F003660	N/A	MTHETKTKLKAALATGYIVLTTCLGVAFFGRFILAIITN
2225171918	F011581	N/A	MTYHSTRPAKALTNALERLMIAVSPQDLEQNHALLCEYRRACELLGYDPAKAQWSGIHEVSASQLPAEQDHTVCYYPLLNPEE
2225171923	F009057	N/A	MPTFRKFAFPDGATADKVLGEFLNPLDFAVAVGEIDKAVCVDVLFHDTCPEPLAAFVVWPKPCGVHAFSGWEEQYTADYQEFATSPQ
2225171926	F001129	N/A	MLGQGGTMEFVDAAVSGKNFDFLVVNAAATFTTLTGSGGEDLLTAYAMSGKSVSAGIVISGXNGGKITAVTPSVGSVIGYTFL
2225171938	F020667	N/A	MSVTLIAYPTTSFVNDLAAWNNFNTRADADGATAKEEACFDCLYARFAPFNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGSASSGYVYGVVDAVGFSDLTQGNLVAGWWQLGPSIYVKKMVDLIFAQAGFRYSSNFFNSVLFNKLVIPYAAGTMPVNLSGSNIFAQATGNTANFIKGANQTLAFPKDTPAPFYDRPGYWVASSSTFVAPALPTRWNVDVTLNVSGSISFSGSIRCNMSIRNITNSTDVSVISNITARTQNQFTVRFENITIPADITANVGFVITADTVVATQNFSVLSGATVQWTCLENPVGIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLIYIEPWKDFYTSGVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFASDKILGRTWDLEGTRLSGSIKPLQTGYRIAQYNRITGQTPWLYWYGLEEDGFAATTPITSLPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPVYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTEFAAKSTSPPRSDPSGLFNGPIDTDPVDPGYEAPVNPELPSEG
2225171939	F021095	N/A	MSIFVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELAGWNLGTFFKFQDIFSGVRPLTTQERFTVYKGGSNFLAINGTKYSAFLPGDSWLVSARVAYKSVNYDFAVTPNLSGTTDFNIQRFACGPGQLSGSIPAFSGAVEGDFYTVRFVSDLASQSDTTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
2225171942	F000557	N/A	MKLQDLTIDQFQRIAAXEFSPVLTXXDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKAHAKIGDVWGVV
2225171945	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKDILENSLVAAKIKVVVTRTNAWEQATLTEMYRASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNIVAWERCLAELQNVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPVREHRWQAEHWIGKAEGMTVYNSCKGWPAPDKFVITF
2225171949	F004837	N/A	MTQDEYLLAQKHRHYWDQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANQQTVTHALNQSPQR
2225171954	F046907	N/A	MPDGGKPVLITDNEGLQVVAWYVADRKMWYSENHSWFTSEVLYWMPIPEIV
2225171957	F009318	N/A	MWVECLYLWTMRRILLLLLLTACTNNRPWTVIEVRPKGDACEYVLSRSNGFGPQVKIKTDKCGKYTLFQTINP