NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225749026

Scaffold 2225749026


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225749026 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9107
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078632Metagenome / Metatranscriptome116N
F084144Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
2225150144F084144N/AMLFKISQEDVFDDNPHLSILPQFKGITSDEFKFVALYADWKSPYKNLGPDERYQRAVGSVASIRKDKMDKYIQAYYEMQGIGSERESLEALEAALSEIRKRLKGAAGLEADEIKKLSASLIDLTKQRKAIELLINNEMNMEQPQDSEVGSMSAIDDFHA
2225150150F078632N/AMAYVNQVNPSNAAPNTIRTGNVDSTYVFGGIQKPDFSDYITYRFPQYTITTXLSRIGRKNPVVGNDVFSWFEKGKFRQAITSATATGATGDTTGSVTYASGTGIQATFLVGDVIRFENDAYGVITAATGAGGGTASGTLVFNFLGSRTSALANGMKFAHLYNLQPEYSNSPSGRVWQENQVNEYLGIMRRAVTCSTTQASNMKWVKKSDSEASYYYINEMETMQEMAMDREMYILAAKSNGSATTGNVNSLTNPLGGNGILPRVINDGVVGTYSSAIAETDLAEQVRLMCLNSQGSEFTVLCGSSAYADAQFALRDYTLNGGISFGVFSGEGIMTGINITKYKFMDKILNFVLYYPFANEALFPAPATSGINWDKAMLFLNMGTDDRGNPLINLRYKQDLLGQSLEFRRTVQEGITSPXXGASASRANGRDGFTVDFYSSIGVELRAANNHGLLYAA
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