Scaffold 2225747854

Overview

Basic Information

• Taxon OID: 2222084010
• Scaffold ID: 2225747854
• Source Dataset Name: Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9642
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Mar Menor, Spain
• Coordinates
  • Lat. (^o): 37.72955
  • Long. (^o): -0.7741
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014683	Metagenome / Metatranscriptome	261	Y
F034140	Metagenome / Metatranscriptome	175	Y
F037097	Metagenome / Metatranscriptome	168	N
F048666	Metagenome / Metatranscriptome	148	Y
F076124	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
2225146731	F076124	N/A	MENKELRDMLGAPFKVGSPCVWTTHNFQWIGTIVKVCKSRVRVKPLPGSTVHTRYEGLPFPDKVVQLDSMPKSALFLAIKNG
2225146733	F037097	AGGAG	MKAFEQAIEAINRIDSTEEIRDLFDAIRLRQTFLGNKTIRTLVTGDRVSFNGRXGHTKGVVKKINRKYVLVDTPQGVWRVPATMLTKEEAEYA
2225146738	F014683	AGGAGG	VSEAPEAKRRFTYTLTVECASEGNADLEQVERLLDLHFQDLVMDDEFVNELDEKEAVTIQVIPNFGQK
2225146749	F048666	GAG	MRASLLLVLVAGVLLTGCGSMTAKEALRYTQXAVXXKNXXEGSTVKEEVKWKIRSAVGQ
2225146751	F034140	GGA	MYRVYYTQDTVEHYEGFYETQEEAEEVALEAADDYDAERVEVRDRFDNIIMVVG