Scaffold 2225744388

Overview

Basic Information

• Taxon OID: 2222084010
• Scaffold ID: 2225744388
• Source Dataset Name: Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8266
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Mar Menor, Spain
• Coordinates
  • Lat. (^o): 37.72955
  • Long. (^o): -0.7741
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F024320	Metagenome / Metatranscriptome	206	Y
F030293	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
2225137910	F030293	AGGAG	MIVEMLDDRVSIESLGLIPHFFERALYIEGQPIQSVADKMDTLYHYGGFVYPFEGTIDSNGRYISYNDFGEDEPLDPIARIDKLGFTLWVYPYAIVGLMDDKGNQKIARFD
2225137914	F024320	GGAGG	MTFEEYERGYYGEDSEDSSEPPEDPETHAMLEHLVEFETEMYRLKCRRRLKICTRRQLERLLIELHGEYWKDAL
2225137916	F002858	AGGAG	MTIDEKSIYEVTGGDYSIYCFGYTQARTVTNDIMKADPWGGIPFVIRKDLEVSLDDRGNVVMPRVVLDKILFLASDELPEGEG
2225137917	F001655	GAGG	MKQPDNAHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLYEHFEQSVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMV