Scaffold 2223602270

Overview

Basic Information

• Taxon OID: 2222084006
• Scaffold ID: 2223602270
• Source Dataset Name: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - oil_dispersant_7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Alabama State University
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Source Dataset Sampling Location

• Location Name: Daulphin Laboratory, Alabama, USA
• Coordinates
  • Lat. (^o): 30.15
  • Long. (^o): -88.446

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014153	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
2224052937	F014153	N/A	ATQKDERNAMKKSYKHRIEYLKALKEDMIEAPKNFSNLSLTTDQLQNLIDDWSAPKPIDAFYKRIFNMTYAEKKAQEELEYFTYDENGKKREVRKSKEETL