NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2221202080

Scaffold 2221202080


Overview

Basic Information
Taxon OID2209111022 Open in IMG/M
Scaffold ID2221202080 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - Chitin enrichment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.481481Long. (o)0.222231Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008703Metagenome / Metatranscriptome329Y
F091065Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
2222030214F091065N/ALTFIDHHTCVKGTRATWDQASFDKEVADITRQFADAEAAVSKTVPARKELIRNSANLFRRDAALVQKQHCLSPSFAANKKKQLQQNYDLLLKQTST
2222030215F008703N/AMSKLQDALDQIKDPTVADAKIQFAQLINDGKAASEAFINSSAEQLEQWTIDVSAKKMTQDEFDNLVSAQTILAKNFVASQALAAQERAEKLTIKAAELAATKIVPLLLIAL

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