NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold deepsgr__Contig_22174

Scaffold deepsgr__Contig_22174


Overview

Basic Information
Taxon OID2199352025 Open in IMG/M
Scaffold IDdeepsgr__Contig_22174 Open in IMG/M
Source Dataset NameSoil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location NameUnited Kingdom Rothamsted
CoordinatesLat. (o)56.03Long. (o)-2.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y

Sequences

Protein IDFamilyRBSSequence
deepsgr_03382890F000805N/AAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIALSVVILLWVWQYRSTRQKANIYPVDSFGGYTTELAGPATAFFLLLTVGLTVFAVVLIVGHIVWGQRF
deepsgr_03382900F001079GGGGGMEPSLQPASALPYVAWSSSSSALIPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPSGSDYRLHCYTTWDTPEQLEAFLERGYTFERMLAGR

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