Scaffold deepsgr__Contig_188905

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold deepsgr__Contig_188905

Scaffold deepsgr__Contig_188905

Overview

Basic Information
Taxon OID	2199352025 Open in IMG/M
Scaffold ID	deepsgr__Contig_188905 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	619
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003294	Metagenome / Metatranscriptome	495	Y

Sequences

Protein ID	Family	RBS	Sequence
deepsgr_03253000	F003294	N/A	IDVPKVITKSDAEKILGVPVKDAKGRNQNGTGGYYESEWSYRCDRRR*GVYFDVLYAGRDAPPHLTQTMFSMLPADGSKSTRIDGLGDKAIFCPNETGMAMLHVLKGDSSITIGIHGLPANAVLDSEKSMATKILANL

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