Scaffold deeps_contig04516.3079

Overview

Basic Information

• Taxon OID: 2199352024
• Scaffold ID: deeps_contig04516.3079
• Source Dataset Name: Bare-fallow DEEP SOIL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9416
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location

• Location Name: United Kingdom Rothamsted
• Coordinates
  • Lat. (^o): 56.03
  • Long. (^o): -2.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010638	Metagenome / Metatranscriptome	301	Y
F093749	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_00166640	F010638	AGGAG	MIVLPRHLTSLALSLTVLILTHPALSQDSATLLRLQRSKAVLNLETNVVHAQGMNGITYGKSGSVANYPNSLACLLVYGDGKYVMEKRDESTVGKPKVKTAEGTLSGDDLQHLKSLLDDEGLKKITSPKPPELPDNAVSVREIESIDAQIDRSGSAQHFTTIKERLKTTEATGMDKFIDNGAPFQKTLNPLLKWFEGLEKKSKSEFKDAKPQYCSPMSIG
deeps_00166650	F093749	AGG	MKRLAFLLSVLVLLALSSLAGSDAASEPKSIRLMLSEVQPGSMSAEQYCTLVFGDRSFHSEKASRHHGQDTERKVFEGQLSEEQWTSLSGILDAKDLKDLKIPATVPPLVMQDTHPYAISIARDGHFQNFEFIDSKSLKPYQGQMKPLLQWWKSLRAQRTPPSGAPASERCALDNSHAVFSQ