Scaffold QLA_contig16996.16996

Overview

Basic Information

• Taxon OID: 2199352018
• Scaffold ID: QLA_contig16996.16996
• Source Dataset Name: Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location

• Location Name: Qinghai Lake, Tibetan Plateau
• Coordinates
  • Lat. (^o): 36.381
  • Long. (^o): 100.218
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y

Sequences

Protein ID	Family	RBS	Sequence
QLA_00550890	F005089	GAG	LALENYNQRNGIVDYRLDGVCNHYFPQYDTLGDPSFKNGEIVLTCKVLKTVKGQLRYTFRVNGKRIAEKRIPSEFLALGAFR