Scaffold QLA_contig01691.1691

Overview

Basic Information

• Taxon OID: 2199352018
• Scaffold ID: QLA_contig01691.1691
• Source Dataset Name: Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2615
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location

• Location Name: Qinghai Lake, Tibetan Plateau
• Coordinates
  • Lat. (^o): 36.381
  • Long. (^o): 100.218
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011474	Metagenome / Metatranscriptome	290	N
F025017	Metagenome / Metatranscriptome	203	N
F048168	Metagenome / Metatranscriptome	148	Y
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
QLA_00550060	F011474	N/A	MKNRIDHLTHFDIVVKEELASCTSADEMLTVLAKNYDLRKPIGGITKAAFTIGLRTAVGMLKPDVSANFSYKAKELTDTRFPHLKIFR
QLA_00550090	F051646	N/A	MVGLFYIHLPMSFSIPQQIEKDIIAGRAQYRTFQTGNGGQSILQVPTNSYAVIYGYDFSPAGGGLKFSSTIQSAAATLNRAVLNASVIRFFETQQISFYTGTDFYPFIHHIDVKTTASTSIIQNTLPAVGATNVVLQLEAIEEINNTPITRQVYITSSKDVTITHGLIQNAIPATNGFIPVTSRTPGFLTYGGSPQLVQAQTNYGPAGTPQQFMQPSPKDFQDFGLGLLPINPNDQAFATPDATNGLLEANVALNALGLPFVETAATNYYLCLHYALYTEAVPEQRG
QLA_00550100	F048168	N/A	LVNATQLQVTLTINNDVVIDQVVACDLGAKETSGVTSGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI
QLA_00550110	F025017	N/A	MANSMNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLILAAPPARPRPYW