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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 2199352005 Open in IMG/M |
| Scaffold ID | 2200040300 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2045 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F000903 | Metagenome / Metatranscriptome | 843 | Y |
| F001897 | Metagenome / Metatranscriptome | 620 | Y |
| F003182 | Metagenome / Metatranscriptome | 502 | Y |
| F005503 | Metagenome / Metatranscriptome | 398 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2200255190 | F005503 | GGAG | MTSGEIGVFIFMVLACILWAICSYAVGYKEGHKDGYQRGKAVGRHASGQAVR |
| 2200255191 | F001897 | AGGCGG | MAFMDNYEGNKERTDRWIATYPQGRLETHIVEFNAEKGYVLVQAKAWRNQTEIDPAAIDYAHGFLAAYSEKMRRWMVEDTCTSALMRVMALVMGGTEKATQEVMAQVNGKSPKAMDYDYWATKFGDVPSYQTREEAEEVKDTAWTDETVPGCSHGSMRWNQSKPDAPKAWAGYFCSEKAKENQCKPRWYVLTSDGTFKPQV |
| 2200255193 | F000403 | GGA | MSDYIEIIHPQSMTAKLLCNGVVVEEYKIEQCDKCSQLRRLDQFGYQKGYDRTENIIWFCGDCR |
| 2200255194 | F000903 | AGGAGG | MIAAISHCHDRSADHSSRIVKNLSWFEYVAQMAESMLAEMVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPAI |
| 2200255195 | F003182 | AGGAG | MHILQFDCAICKKLYGKPKQRFGLKKGAELTEHEWFAQCMGCGTFGIKIVDDKRIAELSQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |