Scaffold 2200034757

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2200034757
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2389
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003888	Metagenome / Metatranscriptome	463	Y
F004995	Metagenome / Metatranscriptome	415	Y
F029658	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
2200245781	F004995	N/A	VVVSYDKIKNKFIYKRTLPITTTNFKMYLKIINSEDFLGFFKSDREQLILLPYFNNVYSNSIVNISGDEAIIIKISGDCILAGNTVDNFGDIDYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRLANIEQITYFELTVHNQDDEFIPSFSDYILLLQFIRHSTKEDKTHTILETMLDYIKQIYLIISQIVFPPSY
2200245782	F029658	N/A	MNFGRAVGLFNRLSPKISKGIGQVANIARNVGQAVQNVRNIGSTVNSMSGGRIGSSPFGQKMQEITNKVESGANFISGNEDKAQQALSTISRKINA
2200245786	F003888	N/A	MDVVNEIEVLENDVKDCNEKCQRVNCSAIYDAIMSSFKLLYDLIFMCCKKKD