Scaffold 2200033385

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2200033385
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F011150	Metagenome / Metatranscriptome	294	Y
F013409	Metagenome / Metatranscriptome	271	N

Sequences

Protein ID	Family	RBS	Sequence
2200243464	F004111	AGG	MKEKIKQVNELCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSFMGILLEDVTSKEEYEELDIPVQPVNTKGTSSANNRYDESTINELIKKVHYAPHTAKLDFLWRANRELIDQIKIKDLATYNSILNKFNSKRDEITTQNEV
2200243465	F013409	N/A	MMNGTIHNLGYEIDSYSPRICDKLFDKVTYIGKASGKNKYGTFYKSKEVFAHSCSIEKTTKGNNERKNKTS
2200243466	F011150	N/A	QHDKIKQQFRHDIIMSKIKQREDKLFRNMFIKISLIITAIVLLVTVVF