Scaffold 2200027589

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2200027589
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2754
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024101	Metagenome	207	Y
F033009	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
2200236322	F024101	GAG	MPKKPIHKMVDEVFDKDITQDLIDELAEEKTFIVNTLRKFVESDEMWAQLADNREARHNFLINLQMLFLNDIENQTLIELATTKWGND
2200236327	F033009	AGGA	VSNSTQLWWAGETTQFGDMQKFYDVNLWTMESKDGSYASVILDGEMIKSWRCDGAWDLARKLAESHLLKREQLEQEGWVTD