Scaffold 2199972023

Basic Information
Taxon OID	2199352005 Open in IMG/M
Scaffold ID	2199972023 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2199352005 Open in IMG/M

Scaffold ID

2199972023 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11659
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (47.37%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11659

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (47.37%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, WI

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F046376	Metagenome	151	Y
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
2200182499	F004727	N/A	MKVTITYHDNDSFTIEEVVKQAVHNYGKTAQIEIMPESTMAYDHIYFGLQQLITHEQLSLLYDKDTAYQQDIKKLRESVLYKVTEIIDQVIIDNESKVG
2200182506	F070116	N/A	MSKFRTWDSEILLDAVKVSLQIRTKIEELCIKTHSMPNGLPNSLIPTENLYTLVCAYEAAYNSLIENDLLKSGNPKTQNNIH
2200182507	F099303	N/A	MKFVEFTYTKADGSQSKRAIIELVTPTKHIEGIDVTSLSQDDFADFCREFSALKAEQHTQTMEKLAQFDLKHNYRKFIPEQMADITTDYV
2200182508	F078719	AGG	MEIIEVYILFALTTGISSCILFLAPAIALAKDMNISNSFTESTLLSYLIYIVVTTVTAPFAILPIVIPSFAERFKLGLERAVLESQT
2200182509	F045760	GGAG	MASVSKSKQTYYTLYKSSTRWATNRKIKLTRVLKRQPNNEQVKDALANIKYRRHTPNSKTVWSHSNIRIAKLFKEFTGRASADLFSSNPKVQAAALAYRHDASNLKVIEGKVNFSLGARAHDSKGNLVWK
2200182510	F038245	AGGA	MKIYFGNANDDTFMDDGLFEVYGNRYYYGVEHGTGPGGLEEVRIFDGCKRYLPIHMEAIPELLVALQEIQKIGEAIQRAKEMTERAESDAKGYVTEGWHGDYDVDFGDAE
2200182513	F046376	N/A	VMGTNATLAEVTSLTNWMVANNYSQADVLVIASELESFETAIDLVGLATTGIEYTPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters