Scaffold 2199922048

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2199922048
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5784
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024558	Metagenome / Metatranscriptome	205	Y
F062765	Metagenome / Metatranscriptome	130	Y
F065787	Metagenome / Metatranscriptome	127	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
2200113761	F065787	GGAGG	VKTGYLEIRESCKLVEYDLKLAGKGKLWVEVYRDSEYEYRALFPDVADWSAVPMTILTHKLHETQTNLS
2200113765	F024558	GAGG	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNKPVGFKGEKIPVGTIGNEDMPTVRIRYEKLRWHDDTLKTILVTPDEELALSLTPEWLPGQRAPIQLYLKTVRKMHDELIKQIRKNQS
2200113771	F081346	AGGAG	MMAKKPDPNKPITHINPPTQVPNRVMPHKPGYNDTVVVPETEANPDKPKKPKKKPSK
2200113773	F062765	N/A	MGPVSLQWYRDRGLTQVEHKVATEDSMLYNHSESYTSETITTYYSCGRIDVRGIPDEPYGDEIGVPPMLATDWSAFGDWLDTVQTMSVWSLEDLVTAYEFQNNTKITWADK