Scaffold 2199922044

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2199922044
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5824
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Demerecviridae → Markadamsvirinae → Tequintavirus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048997	Metagenome / Metatranscriptome	147	N
F092054	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
2200113729	F048997	N/A	MTLFFNLGLLESTTQCDSTKLVETLRLHFIRKSIPKNQYSKIKPIFSLKGNSFLINPALLFTDTTTDIVYKAQYIRLAGRRNYAIYKHYGYTYLDLSFYSDIDLNAIKSNPLLKITENKIHFKYEEK
2200113731	F092054	N/A	WFIDSHGQVFQHKKSTRAKLTTKKIIKVLPADGIGCVLELEGVSHRFKTMVQPESYHQYAGVLYMDNSYLFYGYYEYPQKDTWRLV