Scaffold 2199922042

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2199922042
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5859
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F054039	Metagenome / Metatranscriptome	140	N
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
2200113698	F080054	GGAG	MSTQPKYTAELEALILDVLLPVYEQHCRARGIASLRSEINPELLKQLRKKKILPRLLMPKVNDNF
2200113701	F054039	N/A	MLEVPSNYKRLAKTLNKTRKSLTQTCHDLGIDVDDIEDHILMSVIDQCSHCNIWSQQLVLDLDLNPVCPVCVRIAGL
2200113704	F015601	GGAG	MAGYTKDFLVDAFMSRYVSCNAITIEQLERLEQMAIDLYDRVGRDQFRVYACLDSEAIRTYKASQ