Scaffold 2199916458

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2199916458
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36879
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (21.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010163	Metagenome / Metatranscriptome	307	Y
F019658	Metagenome / Metatranscriptome	228	Y
F046638	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
2200104364	F010163	GAGG	MEFI*IKIISKFMLLLKIAKNSFFSQNTITHNYIRHTFHTINALEFMKEETFSYYVQ*LLLL*FTNLSHLRIKTNYFISYMYFSFINNQKLLSYVINISLSLTNTLINVNNINGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKFFKTKPAAVHFNNLFFKHQSSIFKKLKRKIFAKLVISYLYKAHNGCRLRKKKRIKIRTRTRKL
2200104367	F046638	N/A	MINTLKSSVFKNVAVLIHGPIILLNNDNNNTKLTFKELENINPLINLLGFRLNNKIYSKKQTRNLRNMSYLENICIFHQSMKTFTKLPYYKLKSRKTLLVSK
2200104384	F019658	AGAAGG	MKTNRIRNRNYKLFKYNLLKLQVYSNQHHFKVAHFSNNILEQIETYLKQVLKIIFEYHVWHFKILFIGFPVVSKMRQMKLLHFTNHNFISEKS*MSGVLRNRFSILTYLQLIESRNFSKSLKLLLTIKTKPQLVVMFNQKVETNTINEFYKAGIPIISFN*NSLNSLKIAYHTLGNFNFVERNIKLTFFFLFYSLLKKTPVKKRKKLRQHPF