NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199913121

Scaffold 2199913121


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199913121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002071Metagenome / Metatranscriptome596Y
F008241Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
2200098392F008241AGGMARSKPISVKIATTKVIKALETRLAKLEADFKKQDENEAKYRKAQEKWQKEIGAWAVSKIAKAENLRTNYRAWNKTLNVDFDLICDSKDFPAEPEKDYEEIHRHSYNEMREEM
2200098393F002071AGGAMEIGTTYTTTQSGITGVIKAIDNHPSGVNRILLDVNGTDRWTSVKA

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