Scaffold 2199911478

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199911478
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F019061	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F047662	Metagenome / Metatranscriptome	149	Y
F048267	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
2200095663	F047662	N/A	MDYETHIDIHQYFPGDRFYYKLKVTDVMNMDYYYEGSALTLDNVMECIQLHLKQHQN
2200095665	F008402	GAGG	MTIEITNQVRIQEHSDYWYTAEDIHLDVGCEGFTVSYWEFNKEKGDKRIQHICMNKEEALAIADAIYKLFKN
2200095668	F048267	N/A	MTDEEWETSLKSMNEGVKKWVDEEIDKIKYNVVKEIINRELKND
2200095669	F032252	GAGG	MKLYRYNKDGHLYTLYEQLRPFYNLVAVPYFPNQGILAKSKRNISMNDFIVVAER
2200095670	F019061	N/A	MKNYPMKKMTEPTDTEILEFLLNQFHPHNLQMNGESDWVFMNGGSRMNHLKGKTVRNAVITAMRAK