Scaffold 2199910904

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199910904
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12102
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (55.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F072274	Metagenome / Metatranscriptome	121	Y
F099175	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
2200094426	F099175	GGAGG	MFQEVEKKVKQEQIEELKQFAQYLGVDFEDYLEYLHPDVDFDDYSR
2200094427	F072274	N/A	MSENTEMDGYISPNGLWAAVPYGKRYISIYNGEQICLHNTLETAKKFIQKQNRKSK
2200094451	F000345	GGA	MTENKPNEFGKSLQEWWDSDACKELQKAHQEGIQKAVGKYFMLSEEDKLDMVQAICYIMCKAEQEGTSHRGLQDELGIYPSGFWVDNLMDVHNALWSYYHDKKQEEELQKDIETLQNFTE