Scaffold 2199909260

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199909260
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2799
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F063620	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
2200091704	F058096	N/A	MNAQMTVDECKVMWVVGALQRLATLGMIGPDIPLKLTPEAVDDYVMIDNHRNILFESDFEIASIFNALAKDECDEEPNPDDVEAIVDLILEYKNNRTEIVKFALSHQSI
2200091705	F015080	N/A	MMFDLLKFEPHNIPNAIAARHKFENGWEISVVAGPGLYGRIDENTYEVGIFRPNGNLTEDVSGWNTKEEVSAMMWVLSQL
2200091706	F048940	AGG	MTASQRMERQFFIKFISLIDEVQGKQKLPSQIVASRKSAWVKQVSNPKQKKDALTLV
2200091707	F063620	N/A	MTDSIIPKIAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILERGKSYFYDMRGELERHIRVALVD