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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 2199352004 Open in IMG/M |
| Scaffold ID | 2199907308 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2990 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002398 | Metagenome / Metatranscriptome | 563 | Y |
| F002406 | Metagenome | 562 | Y |
| F009266 | Metagenome / Metatranscriptome | 320 | Y |
| F027179 | Metagenome | 195 | Y |
| F060914 | Metagenome | 132 | N |
| F101144 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2200087929 | F101144 | N/A | MEAKTFTFYMTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLALFTKRHTVAGIEITLKQEEKEQRFFDNMWNFKDDECQDQQFDGFKSEWSLSQRVNFVKPDSLKHLRNSTFETKDGKCLKIVPTFYLDGKPLNESQMKKLGIELTTITCGELDYEYEV |
| 2200087930 | F009266 | N/A | MTPKEIKILDKEIQYLCEQQDRVKAIREYTNINPGYNFLKEVETIESLYKSVLENRKHDKSMYFSCATSGWYVVYLRDKKTYKKGEKFRIKIFHTFVWTDNLD |
| 2200087931 | F002398 | GGA | MIXLISIFLLTXVDXIKNFVSLKTYISENAKAHCYVYFINEDXPDFPRVNXIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK |
| 2200087932 | F060914 | N/A | VQQKEKQLKRLIKVRSDISSSIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDXNELKAQGIL |
| 2200087933 | F027179 | GAGG | MKLIYMADGLFLYEKENSYVVMDQNDNVLKELKTSTSCARYILKTLQSRRAAEREAIEEINKSKV |
| 2200087934 | F002406 | N/A | MENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |