Scaffold 2199906775

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199906775
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3037
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F016800	Metagenome / Metatranscriptome	244	Y
F019061	Metagenome / Metatranscriptome	232	Y
F047649	Metagenome / Metatranscriptome	149	N
F057309	Metagenome / Metatranscriptome	136	Y
F072285	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
2200087032	F016800	AGGA	MLDAFTDYPIPSYGDVEGKQAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELETLPWTKVSYPHSI
2200087033	F013514	GAGG	MSINLEELQKFLDDNNITFEEYMRANMITDEERKYIDKIWVDAIYKNLGEDT
2200087034	F057309	GGA	MTNPLIDKYFELYPEKKEKPKFPRIEDYKGEETFADELKKLRDTSTIPVSKIKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKMTFEVYVYKP
2200087035	F047649	AGGTGG	MRYYETRTYEHQKDFDEKNRAQKYLTEYRDKYLHLRKEVRNLVREQNLTITPDFAKLIGM
2200087036	F072285	GGA	MKYPQSVNKSIFIREVYEDTYETPYDYIVDSMIWENRVDELHTIWCKGKTPKVDEK
2200087038	F019061	N/A	MTEPTDTEILEFLLNQFQAHNLKMNGESDWVFMNTGFPMSRAKGRTARDAVINAMRAK