Scaffold 2199906760

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199906760
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3057
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010161	Metagenome	307	N
F034183	Metagenome	175	Y
F043402	Metagenome	156	Y
F066782	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
2200086974	F034183	AGG	MNKLKKLAEDINEEEAALIFQLLLSAFETANHQKVQYQSEDLKDESSLMVNVELNTRNVPAAVIEKLLDLLK
2200086975	F043402	N/A	MIEKFKELVFSLDEKETNNIITLLTLLLESWKDDKINLYTEIQDFELTTIYKVLNLFNEQTEEAS
2200086977	F066782	GAG	MNDEILKKLGYNSIALEMLLKREAQINPEDILMPGERPSINKDPSLNDLSSDVKSDVENILNKLEEVKELLDNLPEYTMAEEEYDEDVRSFPMHKRHAKDELENLMEEIKQLQRYA
2200086978	F010161	AGGGGG	MTRKNKMLYDALIDYVSYFYNCSDMPDSAKLNALKIFEALQDEKIDVIDFIPVMRQIQFSLDLLAA