Scaffold 2199905664

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199905664
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3152
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F029104	Metagenome	189	Y
F073560	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
2200084996	F005589	N/A	MAKYKHTFWRYVPSTEKFKSEFKFVESLESDSDAVPEFHDHYCIDQVINLETGQMRVKNHSAPEYCVSKFIGWSLELPPVEKANKQEIFIVVHKSSFSHKKIEFDEFLEPENNRYNQEEWDFLLSVIESRFTKQKEWAKVGIRTPSQYDDGTQVFKTEDEFRAFSFGRRAYFLYHLVRNYYFTHLVRRLNIGYTQ
2200084997	F073560	AGGA	MLVCDVSAIDKLIDLYFENLSVIYNGNKFLLYDLRDDFVDNNRECSIDDHEITTSGIYFKDSLIVAIDKQQDFRKDDTINL
2200084998	F029104	N/A	MKANFKEFLTKIDFSDPSEYDFDADKTIDQNIKETLKNINKSSWCWTLFSCEGHNHEDKSKSLPYFVFIVKKKCIPVLLGMLFQTLDPRIDVKTELPLCNTNSINVSWGFTDDKYAIVNVHWWDNFLEDPEQHKKLLADFYEMSFKILEAKL