NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199905359

Scaffold 2199905359


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199905359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13887
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007265Metagenome / Metatranscriptome354Y
F036765Metagenome / Metatranscriptome169Y
F047649Metagenome / Metatranscriptome149N
F053990Metagenome / Metatranscriptome140Y
F073458Metagenome / Metatranscriptome120Y
F093764Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
2200084158F093764N/AMARRNKSASRQMVESLKEQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEEMKPIQYVLNKLDPEDSESHL
2200084159F073458N/AMSAKLIALASEIVDTNPAGAQLIVNLTKAETGADIIEALDNYDSTVLENHTEPVDSEDDDYVTLTDSEGTVTYV
2200084160F053990AGGGGGMIDTCILHDDYEDFAQKFLGVDYEDYISLQMGLPDEDELEIEYPVIA
2200084180F007265AGTAGGMISPYTVVPGTDIVHSITDVYELCDEAEGCTHTVKLNADNGGVYLEATEKQHDSQHKGITEYMSIANKELAIVVAKRILELYGVN
2200084192F036765GGAGMTIKTTELLKLFTKAKQLGFSVEVREDKDGDYVIRIYEMFRPENFDEKAVITQKGESNWNKDGYSFDYMMDVLDGMLEEKRQEKIKEQKRQELLARLTSEEKELLGVK
2200084194F047649N/AMRYYESRTYEHQCDFDAKNRAQKASQDYYNKWINLRKEVRNLVREQNLTVTPEFAKLIGL
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