Scaffold 2199860614

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199860614
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1050
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
2200047767	F022862	N/A	MKFTPQQYELICKTRDEIRDMNAKQHALYDNLTKELNITIYAEDWLFDYIYNEYGSIDDIEARM
2200047769	F024782	N/A	MIEQSIERLRAYNKWRTGEDDRTMDEVGIQPSQLTADIKTVCDELEKLISIYASRN