Scaffold 2199858111

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199858111
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1065
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
2200045526	F009961	GGAGG	MTVDYKIDAMFELRKFLWTQLKLTGLFDPDDYYSDNLGSEIVPIIPVQQLPEMDQFLNGKKHIVYDKIGMSYEENWLICCEKVLFTIYSTDITEIYEIRNLMTDLFRRMDESAKDVNSLKTTNKLIFHSIHITETSPIDPSLELQGFLSSDVILEV
2200045527	F012456	N/A	NQIEKDFGQYVDAQARVKPKSLHHVYEWNKTGNPTARLFNLYLIDSEGLSFRVGRDFKLSKSTVPSKNKKQKNRYVFANKASVMEEGMPIVIRPRSAERLVFELDGATVFMPKGTSVTVKRPGGKAATNQFALTYGRFFGGQPVNSSIKSSGFQRIFNAKIARALSVPTNIKKVQYSFSAGKIRVQADAALSSSFGGSL