Scaffold 2199811750

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199811750
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F038242	Metagenome	166	N
F099298	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
2199983286	F099298	N/A	MLTIKNIEKLTQYGAVEDWRVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWADDSGGAKPIRRLL
2199983287	F038242	N/A	MLTIKNIKELELNFCHSRGLREITETQNKLSEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLATRHFVTIDNVKTKGGLASEISKVLAKAEHWWKNEVTK
2199983288	F007690	N/A	VDDIDELNYMLTIKNILKLQNQPIWDGWEVKLIYEGNHNGTYIFELHRESAWGNGDCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKEKL