Scaffold 2199797285

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199797285
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8202
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000714	Metagenome / Metatranscriptome	924	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F007468	Metagenome / Metatranscriptome	350	Y
F017829	Metagenome / Metatranscriptome	238	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
2199962000	F017829	AGG	MANRYRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQLLSKATRIEFGS
2199962003	F000714	GAGG	METTETSAVTIPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTIHVLNSKIDTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYSYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
2199962004	F000311	GGA	MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLSESYWSDREATGYKEK
2199962005	F001043	AGGAG	MSDYKDGFEDGYKFAREEMMEKLAEIDIADIDSWILDRLSEMIEGGTL
2199962007	F001125	GGCGG	MGDRANFGFKDSKGDVLYLYGHWAGHRMLENLANAVEQARPRWSDHSYATRICISQLINEEWPSETGWGLYINQLGDNEHKVPVINWAAKTFTLMEEDLQAEVFSQSLDAFVSKYSSQPSMV
2199962009	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIYGEFNKFYNLKEGDEDYLC
2199962010	F001460	GAGG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDYTN
2199962011	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLDKDLNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY
2199962012	F000263	GGA	MNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQELSDAIEQEERSEEAMDSMVRTECEGRLDTLTELYKLTYDLSFAIGIRTENRKDGHI
2199962013	F001019	AGGA	MSYEPTLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR
2199962015	F000441	AGAAG	MKMSDQYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIRDRLEQVSN
2199962016	F000852	AGGA	MTTKREYLKTQGITVGVRGRFSGAAKVAIQEAINKGITFSDPQPATNKAK
2199962017	F022414	AGGCGG	MSKTQEIKVAEALVNLTDDHWFNPTIFGRYLADQPVYTVDRIVEMLVSVISELDKVYELLKVRGTSSEGLLLANELNECIKAYQEVNVISNLKLPKPTTYNIKREVKVEPRVFGYTDEDKNPFDQV