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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 2199352004 Open in IMG/M |
| Scaffold ID | 2199788422 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2223 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003750 | Metagenome / Metatranscriptome | 470 | Y |
| F008494 | Metagenome / Metatranscriptome | 332 | N |
| F009750 | Metagenome | 313 | Y |
| F010398 | Metagenome | 304 | Y |
| F043399 | Metagenome | 156 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2199948112 | F009750 | GAG | MKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYFYQPF |
| 2199948113 | F008494 | AGGAG | MTKTEVITMFMNAVGQYTTAIDKTADSNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA |
| 2199948114 | F010398 | AGGA | MEISIQGIAKVNYELVIDEDVFNDACEECGLDPANFKKFTKDQWDELNPHLVQAVVDNESDIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSFEIL |
| 2199948115 | F043399 | N/A | MFLIDYPIVIWTIVKKNNNYILLDSSGVEVFRRKENRKKEIYQYCEDNGIDFQEEF |
| 2199948116 | F003750 | GAG | MQVAIYSGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYILGGNIDTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |