NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199786774

Scaffold 2199786774


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199786774 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010764Metagenome / Metatranscriptome299Y
F019061Metagenome / Metatranscriptome232Y
F030059Metagenome / Metatranscriptome186Y
F037700Metagenome / Metatranscriptome167Y
F071163Metagenome / Metatranscriptome122N
F074911Metagenome / Metatranscriptome119N
F091921Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
2199945543F091921AGGAMIEMRIVEHEMGMRPDIQYRFMLFSLGQGGYLCPPNPDMKWSEWRTCPYVKYEEIEK
2199945546F010764AGGAGMIKIQKTYHLALTEDQAKELYEFLRFAKEGSYLTHDKELMLVYHELKNLFDSGIR
2199945547F037700N/AMKKYRIKKETYGDTTKYYPQEKFLYSWYNIFAYEVYFDGGYDTLEEAKEQLCEYCREPVVEYLDFDPVRDCR
2199945548F030059GAGGMNDTINKNLTLIQEVAAKALEEHKNSTERFGGVNYANLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELEW
2199945549F071163GGAGMTKTQSALERVIIELDNWCDNWTPTSYNDPRISLRQIADRARNVLEQEKNDYDFK
2199945550F074911AGGAGMILNEEILKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIYDKAYDDGCFDNY
2199945552F019061N/AMTEPTDTEILEFLLNQFQAHSLKMNGESDWVFINTGFPMSRAKGRTARDAVINAMRAK
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